wiki:MutalyzerExercise

Mutalyzer Exercises

Before you start

For this exercise, it is most convenient to right-click this link and open a separate window for Mutalyzer. The exercise will use different Mutalyzer functionalities.

The basics:

Description Extractor exercise How to generate the HGVS variant description from a reference sequence and an observed sequence.

Name Generator exercise How to generate complete sequence variant descriptions

The checkers:

Name Checker exercise How to check complete sequence variant descriptions

Syntax Checker exercise How to check the syntax of the complete sequence variant description

Custom reference sequences:

Reference File Loader exercise How to load and use your own reference sequence

Conversions:

Position Converter exercise How to convert chromosomal positions to transcript orientated positions and vice versa.

SNP Converter exercise How to convert a dbSNP rsId to HGVS notation.

High-throughput and programmatic functionality:

Batch Checkers exercise? How to perform large quantities of checks using list of inputs.

Web services exercise? How to programmatically access Mutalyzer 2 functionality via SOAP.

Mutalyzer's main functions can be selected from the index page or the list on the left side of any Mutalyzer window. For more information, please check the help file.

Although the correctness of Mutalyzer has been checked using complete sequence variation database contents, some changes might not be processed correctly. Please include screenshots and submitted information when reporting any strange results to:

mutalyzer@humgen.nl

You can use Mutalyzer's bugtracking system to report errors and send in feature requests.

Last modified 5 years ago Last modified on Feb 19, 2013 10:15:48 AM